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Installation
User Guide
Tutorials
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- CRISPR screening
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  - 10k A375 Cells Transduced with (1) Non-Target and (1) Target sgRNA, Dual Indexed
- Cell surface protein labeling
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  - CITE-Seq; 8k cord blood mononuclear cells with 13 antibodies
  - 1k Human PBMCs Stained with a Panel of TotalSeq B Antibodies, Dual Indexed
- CellPlex
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  - 10k 1:1 Mixture of Raji and Jurkat Cells Multiplexed, 2 CMOs
  - 30k Mouse E18 Combined Cortex, Hippocampus and Subventricular Zone Nuclei Multiplexed, 12 CMOs
- Cell hashing
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  - Peripheral blood mononuclear cells with 8 antibodies
- Targeted transcript enrichment
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  - Hodgkin’s Lymphoma, Dissociated Tumor: Targeted, Gene Signature Panel
- Pseudo-bulk
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  - 10k A375 Cells Transduced with (1) Non-Target and (1) Target sgRNA, Dual Indexed
  - 10k 1:1 Mixture of Raji and Jurkat Cells Multiplexed, 2 CMOs

Development

Changelog
GitHub Repository

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Changelog¶

0.0.11 (Jun 17 2021)¶

Rename options -r1_coords and -r2_coords to -r1_c and -r2_c, respectively.
Improve logging information.

Copyright © 2020-2021, Jialei Duan

Contents

Changelog
- 0.0.11 (Jun 17 2021)