Welcome to fba
’s documentation!¶
fba
: a flexible and streamlined package for feature barcoding assays.
Quickstart¶
Installation¶
$ pip install fba
Usage¶
$ fba
usage: fba [-h] ...
Tools for feature barcoding analysis
optional arguments:
-h, --help show this help message and exit
functions:
extract extract cell and feature barcodes
map map enriched transcripts
filter filter extracted barcodes
count count feature barcodes per cell
demultiplex demultiplex cells based on feature abundance
qc quality control of feature barcoding assay
kallisto_wrapper
deploy kallisto/bustools for feature barcoding
quantification
Citation¶
Jialei Duan, Gary Hon. FBA: feature barcoding analysis for single cell RNA-Seq. Bioinformatics. 2021 May 17:btab375. doi: 10.1093/bioinformatics/btab375. Epub ahead of print. PMID: 33999185.